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The Bajoran Militia was the military arm of the Bajoran Provisional Government, originally made up of many former resistance fighters from the Occupation of Bajor.

The structure was comparable to that of an Earth army, with similar ranks. Officers of the Militia were usually graduates of the Bajoran Military Academy, although many commissions were awarded on the basis of demonstrated skills and merit of the soldiers who were part of the resistance against the occupation.

The militia jointly operated Deep Space nine with Starfleet. From 2369 to 2375 the station was commanded by a Starfleet command level officer and the executive officer was a Militia member. When the station's commander, Captain Sisko, disappeared in late 2375, his executive, Colonel Kira, took command

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